Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005524.1_4075_4417_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4075 - 4417

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGGCG

5'SS Class:

major

3'SS Sequence:

ACTGTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

CCCTCCTGCACC

Flanking Amino Acid:

VPVEDFTIHGGLSRILKTRG

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

64.1

39.3

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

74.2

0.54

0.9

66.6

Minor 5ss

28.1

-2.5

3.6

47.1

Minor BPS

49.4

-0

58.45

46.5

Associated Gene:

Gene:

OGDH

Ensembl Gene ID:

ENSAPLG00000016277

Chromosome:

PEDO01005524.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016985

54 - 8142

8089