About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005541.1_4088_5276_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4088 - 5276
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACCCCCTGACCA
Flanking Amino Acid:
PTQRASLIIDEGNIASEDSS
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
48.2
-0.1
1.8
55.95
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002547
Chromosome:
PEDO01005541.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002629
21 - 13958
13938