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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005552.1_1330_1450_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1330 - 1450
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
AAAAAAAAAAAT
Flanking Amino Acid:
ENSDSFVGREVILDLLQYEN
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
54
0.1
1
59.7
32.6
Major PPT
75.7
0.58
0.8
68.4
31.8
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
34
-1.1
1.9
46.69
37.2

Associated Gene:

Gene:
QSOX1
Ensembl Gene ID:
ENSAPLG00000011109
Chromosome:
PEDO01005552.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011561
180 - 5037
4858