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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005552.1_2111_3315_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2111 - 3315
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CATTTCATCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTCCTCACCC
Flanking Amino Acid:
FKCYVATLAKYFPGRPCVQS
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76
0.59
0.9
70.1
34.6
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
61.7
0.35
1.9
74.56
42.5

Associated Gene:

Gene:
QSOX1
Ensembl Gene ID:
ENSAPLG00000011109
Chromosome:
PEDO01005552.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011561
180 - 5037
4858