Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005552.1_369_414_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

369 - 414

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CCG|GCGAGGCGG

5'SS Class:

major

3'SS Sequence:

GTGTTCCTTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TCGTGTTTATCT

Flanking Amino Acid:

PVTSHARGCPFFRAFTKKAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.3

53.9

43.4

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

79.3

0.66

0.9

41.4

Minor 5ss

14.9

-4.1

3.5

21.2

37.4

Minor BPS

51.4

0.12

70.84

46.6

Associated Gene:

Gene:

QSOX1

Ensembl Gene ID:

ENSAPLG00000011109

Chromosome:

PEDO01005552.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011561

180 - 5037

4858