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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005561.1_3604_3813_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3604 - 3813
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGACCG
5'SS Class:
major
3'SS Sequence:
CCCCCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAG
U12 Branch Point Sequence:
GGGGCTGCGACC
Flanking Amino Acid:
LLLYAWQICKGMEYLGAQRC
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
56
43.1
Major BPS
46.9
-0.1
1.7
42.8
49.4
Major PPT
78
0.63
0.7
71.7
26.3
Minor 5ss
25.4
-2.8
3.1
30.4
42.9
Minor BPS
38.5
-0.9
2.1
42.7
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029145
Chromosome:
PEDO01005561.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045714
2873 - 5233
2361