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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005561.1_3939_4041_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

3939 - 4041

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGCGCG

5'SS Class:

major

3'SS Sequence:

TGCGGGTGCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCGTAA

U12 Branch Point Sequence:

GTGTCCGTAACG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

56.7

42.7

Major BPS

47.9

-0.1

1.4

45.6

39.5

Major PPT

56.5

0.15

1.1

43.9

Minor 5ss

30.8

-2.2

3.2

30.6

42.7

Minor BPS

60.6

0.19

2.1

68.02

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029145

Chromosome:

PEDO01005561.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045714

2873 - 5233

2361