Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005567.1_715_2315_F

Intron Information:

Intron Rank:

144946

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

715 - 2315

Intron Length:

1601

Sequence Information:

Terminal Dinucleotides:

GC-GG

5'SS Sequence:

CAG|GCCATGCTT

5'SS Class:

major

3'SS Sequence:

TTTGCTTTACGGG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGCT

U12 Branch Point Sequence:

TTTTGCTTTACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.2

70.3

Major BPS

38.1

-0.7

4.3

71.4

45.1

Major PPT

35.5

-0.8

3.4

58.8

46.1

Minor 5ss

21.8

-3.2

39.2

Minor BPS

62.7

0.25

2.2

75.67

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028148

Chromosome:

PEDO01005567.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026422

21 - 2963

2943