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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005591.1_440_889_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
440 - 889
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
AATGGCAAGACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GCATCTTGAATG
Flanking Amino Acid:
ATSVDTKGKQRRHIMKMDRI
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
49.2
-0
1.1
40.6
42.3
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
54
-0
1.5
53.64
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028517
Chromosome:
PEDO01005591.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043778
409 - 1393
985