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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005619.1_1571_1672_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1571 - 1672
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCACCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
CTGCCCTCACCT
Flanking Amino Acid:
GSALKNTSGRDGNEAAGFGS
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
71.5
0.48
0.8
65.5
30
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
50.5
0.09
1.9
69.53
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028176
Chromosome:
PEDO01005619.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020085
99 - 5570
5472
ENSAPLT00000019788
99 - 5570
5472
ENSAPLT00000024139
99 - 5570
5472