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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005619.1_2417_2724_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2417 - 2724
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAACC
5'SS Class:
major
3'SS Sequence:
CCCCATCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCCCCCCCATCC
Flanking Amino Acid:
ELREATECREFLDQENRMSR
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
68.6
36.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
72
0.5
0.8
64.8
30.4
Minor 5ss
27.9
-2.5
3
34.8
41.3
Minor BPS
42.8
-0.5
2
52.79
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028176
Chromosome:
PEDO01005619.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024139
99 - 5570
5472
ENSAPLT00000020085
99 - 5570
5472
ENSAPLT00000019788
99 - 5570
5472