Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005619.1_3907_4040_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3907 - 4040

Intron Length:

134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCTCGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAG

U12 Branch Point Sequence:

GTGCCCTGAGCC

Flanking Amino Acid:

ADEALRAKAECDSFLEAFSS

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

67.8

43.5

Major BPS

-0.1

1.5

42.6

40.4

Major PPT

70.1

0.45

65.9

35.9

Minor 5ss

28.6

-2.5

3.5

37.8

47.1

Minor BPS

50.8

0.01

1.7

62.13

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028176

Chromosome:

PEDO01005619.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020085

99 - 5570

5472

ENSAPLT00000019788

99 - 5570

5472

ENSAPLT00000024139

99 - 5570

5472