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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005619.1_4176_4438_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4176 - 4438
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
TTTTCTCTTGCA
Flanking Amino Acid:
QEDQGALAQEKEQVKALVSR
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
34.7
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
31.2
-2.2
3.2
38.8
46.5
Minor BPS
40.7
-0.7
3.7
71.87
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028176
Chromosome:
PEDO01005619.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019788
99 - 5570
5472