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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005635.1_2302_2677_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2302 - 2677
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TGGTGCTGAAAG
Flanking Amino Acid:
EQKVPSEAGTAGLPILVMNV
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
75.9
0.58
0.9
69.6
36.7
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
47.3
-0.3
2
54.5
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026590
Chromosome:
PEDO01005635.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047332
521 - 4615
4095