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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005648.1_4073_5447_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4073 - 5447
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATCC
Flanking Amino Acid:
DASDLSEVFDFCLSEADKEQ
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
74.3
36.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.7
0.85
0.7
80.8
31.1
Minor 5ss
40.9
-1
3
56.6
41.1
Minor BPS
69.9
0.6
1.6
77.62
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026262
Chromosome:
PEDO01005648.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019070
2139 - 21250
19112