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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005648.1_9074_15516_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9074 - 15516
Intron Length:
6443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AACATGTTAATC
Flanking Amino Acid:
VLQYFIKFWTKELTDAYAKY
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.1
0.77
0.7
77
31.7
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
47
-0.2
2
53.86
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026262
Chromosome:
PEDO01005648.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019070
2139 - 21250
19112
ENSAPLT00000043129
2084 - 20900
18817