Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005651.1_1670_1802_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1670 - 1802

Intron Length:

133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTCCGTCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTGAT

U12 Branch Point Sequence:

CCGTGTGTGATG

Flanking Amino Acid:

SLICSLGSFMVILVGLLRYA

Intron Amino Acid Position:

304

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

76.2

39.9

Major BPS

63.5

0.34

1.4

57.1

49.4

Major PPT

71.2

0.48

0.8

64.8

30.8

Minor 5ss

35.9

-1.6

3.3

40.9

45.3

Minor BPS

37.9

-1.1

2.2

36.34

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022856

Chromosome:

PEDO01005651.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020468

21 - 3752

3732