Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005651.1_1931_2272_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1931 - 2272

Intron Length:

342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCTT

5'SS Class:

strong_major

3'SS Sequence:

CCTGTGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAC

U12 Branch Point Sequence:

GAGCCGCGAGCT

Flanking Amino Acid:

AGLTMVGNFQVDHAKVLHYI

Intron Amino Acid Position:

347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.6

37.3

Major BPS

57.5

0.19

1.1

48.8

38.1

Major PPT

68.4

0.42

0.9

61.3

35.1

Minor 5ss

31.2

-2.1

3.5

46.7

48.6

Minor BPS

35.1

-1

2.3

49.65

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022856

Chromosome:

PEDO01005651.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020468

21 - 3752

3732