Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005661.1_172_354_R

Intron Information:

Intron Rank:

133326

Intron Class:

major

Intron Phase:

Intron Coordinates:

172 - 354

Intron Length:

183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGTGGC

5'SS Class:

major

3'SS Sequence:

TTTGCCTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTGCAC

U12 Branch Point Sequence:

TACGTCTGCACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

1.3

70.6

41.4

Major BPS

52.5

0.06

1.4

65.3

41.6

Major PPT

82.7

0.73

0.8

73.9

36.7

Minor 5ss

34.4

-1.8

3.2

42.8

37.9

Minor BPS

46.8

-0.1

65.1

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018973

Chromosome:

PEDO01005661.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041041

21 - 1307

1287