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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005673.1_1286_2629_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1286 - 2629
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTCCATTT
5'SS Class:
weak_major
3'SS Sequence:
GACCTGCGGGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGGGGAT
U12 Branch Point Sequence:
CGGGCGGGGACC
Flanking Amino Acid:
GCGREGGFHSALSDTVLSLE
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.3
57.4
42.2
Major BPS
41.6
-0.5
1.5
32.2
43.7
Major PPT
42
-0.4
1.7
38.3
39.7
Minor 5ss
44.8
-0.6
3.2
62.9
42.8
Minor BPS
33
-1.3
2.4
38.22
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023550
Chromosome:
PEDO01005673.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032322
1222 - 2906
1685