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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005716.1_1088_2635_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1088 - 2635
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTTTCCCTCACA
Flanking Amino Acid:
IIYLSYPTRIDLNGTLVIRL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
68
42.9
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
82.1
0.72
0.7
76.2
25.9
Minor 5ss
34.7
-1.7
2.8
39.7
39.7
Minor BPS
59.2
0.28
2.1
75.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025009
Chromosome:
PEDO01005716.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033589
156 - 3731
3576