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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005728.1_1061_1164_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1061 - 1164
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
CCTGGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
CAGCGCTGCAGG
Flanking Amino Acid:
LPAESVNQFLEELPEEPAQW
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.5
39.8
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
78.6
0.64
0.9
72
38
Minor 5ss
28.8
-2.4
3
29.1
36.7
Minor BPS
32.9
-1.4
2.2
30.23
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027862
Chromosome:
PEDO01005728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046037
21 - 4296
4276