Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005728.1_1343_1429_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1343 - 1429

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGCATA

5'SS Class:

major

3'SS Sequence:

TTCCCCGTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAAGCAT

U12 Branch Point Sequence:

CAGGCCTGACTT

Flanking Amino Acid:

QLLHTFPPTHESSPGVPFWS

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.3

74.1

38.4

Major BPS

45.1

-0.3

1.5

51.7

43.9

Major PPT

67.9

0.4

61.1

40.1

Minor 5ss

38.9

-1.2

47.8

41.5

Minor BPS

45.8

-0.2

1.8

57.31

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027862

Chromosome:

PEDO01005728.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046037

21 - 4296

4276