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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005728.1_191_277_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
191 - 277
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTCC
5'SS Class:
major
3'SS Sequence:
TGTGTCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGGAG
U12 Branch Point Sequence:
GGACCTGGGAGC
Flanking Amino Acid:
QFLFRAADVSKPKAEVAAAA
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.2
38.2
Major BPS
38.2
-0.7
1.7
32.2
43.7
Major PPT
76.3
0.59
0.9
70.3
36.3
Minor 5ss
40.2
-1.1
2.9
52.1
44.7
Minor BPS
35
-1.1
2
37.91
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027862
Chromosome:
PEDO01005728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046037
21 - 4296
4276