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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005738.1_71_160_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71 - 160
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCATCCTGGATT
Flanking Amino Acid:
ELYELLETLGSGHFGVVRRC
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.9
0.56
0.8
69
31.5
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
57.6
0.32
1.5
68.12
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028200
Chromosome:
PEDO01005738.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041006
9 - 946
938