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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005744.1_612_803_R

Intron Information:

Intron Rank:
130483
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
612 - 803
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
CTG|GTGTTACTG
5'SS Class:
weak_major
3'SS Sequence:
TCCCATGTTACTG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TCCCATGTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.3
0.22
1
49.7
40.6
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
41.9
-0.4
3.2
59.7
40.3
Minor 5ss
36.4
-1.5
3.1
44.4
44.5
Minor BPS
40.7
-0.6
2.3
57.84
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017462
Chromosome:
PEDO01005744.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024688
21 - 1111
1091