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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005744.1_90_323_R

Intron Information:

Intron Rank:
130484
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
90 - 323
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
CTG|GTGCCACCT
5'SS Class:
weak_major
3'SS Sequence:
ACTGGTTCCACTG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
ACTGCTGTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.2
48.9
41.6
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
39.7
-0.6
3.1
53.3
41
Minor 5ss
33.8
-1.8
3.4
46
44.1
Minor BPS
44.6
-0.3
2.4
65.07
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017462
Chromosome:
PEDO01005744.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027192
21 - 1111
1091