Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005755.1_157_1004_F

Intron Information:

Intron Rank:

143124

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

157 - 1004

Intron Length:

848

Sequence Information:

Terminal Dinucleotides:

GC-AC

5'SS Sequence:

CAC|GCCAGGGGG

5'SS Class:

weak_major

3'SS Sequence:

CCCCACGCGGCAC|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCCCAC

U12 Branch Point Sequence:

AGCCCCCCACGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.9

0.16

59.5

42.5

Major BPS

-0.3

1.2

49.7

35.3

Major PPT

34.4

-0.9

3.1

41.6

32.7

Minor 5ss

15.1

-4

3.7

19.4

29.4

Minor BPS

35.5

-1.1

40.03

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027113

Chromosome:

PEDO01005755.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035898

21 - 1264

1244