Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005768.1_532_825_R

Intron Information:

Intron Rank:

139366

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

532 - 825

Intron Length:

294

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

CGGCGCCCCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CGCTAAC

U12 Branch Point Sequence:

CTACCGCTAACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

57.1

0.18

1.1

Major PPT

58.9

0.2

0.9

50.3

34.1

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

-0.5

2.4

54.52

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022450

Chromosome:

PEDO01005768.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030641

287 - 1603

1317