Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005776.1_36874_36960_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

36874 - 36960

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTT|GCCAGGATG

5'SS Class:

weak_major

3'SS Sequence:

TTGTCTCACGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAT

U12 Branch Point Sequence:

CCCTCCTTATCT

Flanking Amino Acid:

AKSLWLSSTQEIGEEL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.7

0.13

1.4

63.7

40.5

Major BPS

86.1

0.9

0.7

85.7

22.9

Major PPT

74.5

0.55

0.9

70.1

35.4

Minor 5ss

23.5

-3

37.5

41.1

Minor BPS

65.5

0.56

1.7

75.16

47.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027450

Chromosome:

PEDO01005776.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032583

36856 - 37116

261