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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005776.1_42660_43129_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42660 - 43129
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTATTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTATTTTATTT
Flanking Amino Acid:
WALNLHLQNARSGKTYSYVF
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.5
42.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
77.3
36.8
Minor 5ss
34.8
-1.7
2.9
43.9
43.7
Minor BPS
55.5
0.25
1.6
71.35
40.7

Associated Gene:

Gene:
CEL
Ensembl Gene ID:
ENSAPLG00000003416
Chromosome:
PEDO01005776.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003513
40767 - 47531
6765