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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005776.1_45283_45703_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45283 - 45703
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTGT
5'SS Class:
major
3'SS Sequence:
TTTTGTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CATTACTGAAAT
Flanking Amino Acid:
SAGGTSVSLQILSPKNAGLF
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.3
71.4
41.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.8
0.74
0.9
77.3
37
Minor 5ss
43.4
-0.7
2.6
59.2
45.2
Minor BPS
54.9
0.23
1.8
72.94
42.9

Associated Gene:

Gene:
CEL
Ensembl Gene ID:
ENSAPLG00000003416
Chromosome:
PEDO01005776.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003513
40767 - 47531
6765