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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005777.1_2502_2648_F

Intron Information:

Intron Rank:
149648
Intron Class:
major
Intron Phase:
Intron Coordinates:
2502 - 2648
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGAATTT
5'SS Class:
major
3'SS Sequence:
CCTTCCCCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTCTCCTCACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.2
67
39.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
72.7
0.51
0.8
70.8
28.7
Minor 5ss
38.2
-1.3
3.5
56.5
47.8
Minor BPS
50.7
0
1.9
61.86
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030531
Chromosome:
PEDO01005777.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047334
2102 - 4471
2370
ENSAPLT00000036453
2102 - 5653
3552