Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005788.1_1229_1323_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1229 - 1323

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTCACCAGG

5'SS Class:

weak_major

3'SS Sequence:

TTGTGTCTCGAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCAAT

U12 Branch Point Sequence:

CCTTCTCCAATT

Flanking Amino Acid:

RQQEAPVSPLSPPVRAKRVT

Intron Amino Acid Position:

156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.7

0.04

1.4

47.2

48.4

Major BPS

59.5

0.24

1.3

68.4

35.9

Major PPT

0.38

1.1

67.8

Minor 5ss

39.9

-1.1

2.7

46.5

43.7

Minor BPS

49.3

0.03

1.9

68.25

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018436

Chromosome:

PEDO01005788.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027910

620 - 1941

1322