Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005800.1_1328_2308_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1328 - 2308

Intron Length:

981

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGA|GCACGCCGA

5'SS Class:

weak_major

3'SS Sequence:

GGTCAGCCCCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGAGCAA

U12 Branch Point Sequence:

GACAGCTGAGCA

Flanking Amino Acid:

LGQLHKGSFREGGNKWVIGK

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.7

0.11

1.4

45.1

42.2

Major BPS

45.6

-0.2

1.4

51.7

43.9

Major PPT

54.8

0.11

0.9

43.6

38.5

Minor 5ss

27.1

-2.6

4.1

34.2

42.7

Minor BPS

41.4

-0.6

47.27

Associated Gene:

Gene:

LPXN

Ensembl Gene ID:

ENSAPLG00000027655

Chromosome:

PEDO01005800.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026980

152 - 2378

2227

ENSAPLT00000020651

228 - 2378

2151