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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005800.1_1367_4829_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1367 - 4829
Intron Length:
3463

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCTCTTCCT
5'SS Class:
weak_major
3'SS Sequence:
GCACCGTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CCTACACGAACA
Flanking Amino Acid:
DKMYCQPCHDNPEKQLKART
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.4
55.6
43
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
67.9
0.4
1
57.1
43
Minor 5ss
23.6
-3
3.8
35.2
34.1
Minor BPS
43.7
-0.4
2
55.19
43

Associated Gene:

Gene:
LPXN
Ensembl Gene ID:
ENSAPLG00000027655
Chromosome:
PEDO01005800.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024802
36 - 4905
4870