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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005800.1_189_336_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
189 - 336
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGA|GCGGGGGCA
5'SS Class:
weak_major
3'SS Sequence:
GTGAGCCCCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCCCAT
U12 Branch Point Sequence:
TGAGCCCCAAAG
Flanking Amino Acid:
IPAAGSDGAGTPSPALRPPR
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.3
54.8
33.1
Major BPS
49.3
-0
1.3
58.2
40.4
Major PPT
49.2
-0
1.1
45
36.8
Minor 5ss
13.6
-4.2
3.8
16
30.5
Minor BPS
42.7
-0.6
2
47.91
44.3

Associated Gene:

Gene:
LPXN
Ensembl Gene ID:
ENSAPLG00000027655
Chromosome:
PEDO01005800.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026980
152 - 2378
2227