Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005800.1_324_398_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

324 - 398

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

TCCCACCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

GCACCCTCACCT

Flanking Amino Acid:

ASCCKPIAGKVLTALGKAWH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

68.5

0.42

0.8

61.5

28.6

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

48.4

-0

1.9

63.66

45.8

Associated Gene:

Gene:

LPXN

Ensembl Gene ID:

ENSAPLG00000027655

Chromosome:

PEDO01005800.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029235

21 - 1379

1359