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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005800.1_4705_4973_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4705 - 4973
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
CCCCCCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
TGTGCCTGATTT
Flanking Amino Acid:
LPLIDRNQKTDKKSSREEIQ
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
72
0.5
0.7
68.8
24.9
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
53.3
0.18
1.8
73.56
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006855
Chromosome:
PEDO01005800.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007165
4062 - 9667
5606