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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005800.1_5150_5688_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5150 - 5688
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
AGGGCTGTGGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTTCAG
U12 Branch Point Sequence:
GTTGCTTCAGGC
Flanking Amino Acid:
IEKLVLINKTGAAWLGLVVT
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
48.3
-0.1
1.7
59.3
47.1
Major PPT
42.5
-0.4
1.7
38.8
44
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
43.5
-0.5
2
54.91
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006855
Chromosome:
PEDO01005800.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007165
4062 - 9667
5606