Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005800.1_6270_6435_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6270 - 6435

Intron Length:

166

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCACC

5'SS Class:

major

3'SS Sequence:

GCTCCCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

CCGGGCTCACGC

Flanking Amino Acid:

IQNLCAGSWTYGRYIRSALR

Intron Amino Acid Position:

345

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

66.2

39.6

Major BPS

52.1

0.05

1.3

41.8

Major PPT

69.1

0.43

0.8

61.8

28.8

Minor 5ss

35.7

-1.6

2.9

45.4

42.5

Minor BPS

-1.3

2.1

32.89

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006855

Chromosome:

PEDO01005800.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007165

4062 - 9667

5606