About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005812.1_6344_6970_R

Intron Information:

Intron Rank:
147274
Intron Class:
major
Intron Phase:
Intron Coordinates:
6344 - 6970
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTCG
5'SS Class:
major
3'SS Sequence:
TTTTCTATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTTTTTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
66.2
40
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86
0.81
0.7
82.2
28
Minor 5ss
43
-0.8
2.4
51.1
45.4
Minor BPS
49.7
0.06
1.8
71.98
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026563
Chromosome:
PEDO01005812.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036152
3819 - 8498
4680