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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005812.1_7149_7658_R

Intron Information:

Intron Rank:
147275
Intron Class:
major
Intron Phase:
Intron Coordinates:
7149 - 7658
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACATAT
5'SS Class:
major
3'SS Sequence:
CTTCTTGCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTAGTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.2
69
38.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.9
0.61
0.8
69.5
36.8
Minor 5ss
45.6
-0.5
3
65.6
45.5
Minor BPS
62.6
0.47
2.2
84.76
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026563
Chromosome:
PEDO01005812.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036152
3819 - 8498
4680