About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005818.1_1616_1705_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1616 - 1705
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGATG
5'SS Class:
major
3'SS Sequence:
TCGCCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
CCCCCGGTGATG
Flanking Amino Acid:
GLDVSKCEIARFYKLHERRC
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.5
42.7
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
71.2
0.48
0.8
65.2
30.5
Minor 5ss
29
-2.4
3.4
38.2
47
Minor BPS
35.8
-1.2
2.4
34.62
41.1

Associated Gene:

Gene:
CORO1B
Ensembl Gene ID:
ENSAPLG00000023559
Chromosome:
PEDO01005818.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005521
21 - 3602
3582
ENSAPLT00000047093
291 - 3602
3312
ENSAPLT00000043473
291 - 3602
3312