Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005818.1_2758_2858_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2758 - 2858

Intron Length:

101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGGGGC

5'SS Class:

major

3'SS Sequence:

CCCCCTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAC

U12 Branch Point Sequence:

TTCCCCCCCACG

Flanking Amino Acid:

ASGSEDCTVMVWQIPEGGLS

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

60.2

38.7

Major BPS

48.9

-0

1.3

58.1

40.4

Major PPT

70.5

0.46

0.7

64.4

Minor 5ss

24.3

-3

3.3

28.8

38.7

Minor BPS

43.1

-0.6

2.3

53.97

46.4

Associated Gene:

Gene:

CORO1B

Ensembl Gene ID:

ENSAPLG00000023559

Chromosome:

PEDO01005818.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043473

291 - 3602

3312

ENSAPLT00000005521

21 - 3602

3582