About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005825.1_932_1055_F

Intron Information:

Intron Rank:
132228
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
932 - 1055
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCACCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
TCCCCCCCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
59.7
0.22
0.7
50.6
26.2
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
42.7
-0.5
2.1
52.85
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021041
Chromosome:
PEDO01005825.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041974
28 - 1654
1627
ENSAPLT00000039548
161 - 1654
1494
ENSAPLT00000025367
28 - 1654
1627