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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005835.1_777_1050_R

Intron Information:

Intron Rank:
147559
Intron Class:
major
Intron Phase:
Intron Coordinates:
777 - 1050
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGATCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCTTCCTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.9
0.45
1
65.9
40.6
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
61.6
0.44
1.8
77.81
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026755
Chromosome:
PEDO01005835.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036742
21 - 1876
1856