Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005878.1_3844_5917_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3844 - 5917

Intron Length:

2074

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

CTTCCGTGAAGC

Flanking Amino Acid:

NNEDIFPTNVGTPFPKNFLP

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

66.1

42.1

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

77.7

0.62

0.7

69.1

31.4

Minor 5ss

34.6

-1.7

2.8

45.3

Minor BPS

-0.4

2.4

60.44

44.6

Associated Gene:

Gene:

MOB3A

Ensembl Gene ID:

ENSAPLG00000021865

Chromosome:

PEDO01005878.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042288

1582 - 6457

4876