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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005885.1_690_848_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
690 - 848
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCCGGCGGC
5'SS Class:
major
3'SS Sequence:
CTGCTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
ACTTCTCTGACG
Flanking Amino Acid:
SWAQPRAVPWAPRHGMAGED
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.3
0.29
1.3
57.7
40.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
76.3
0.59
0.8
69.7
31
Minor 5ss
19.9
-3.5
4
23.4
37.5
Minor BPS
54.7
0
1.7
61.29
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016957
Chromosome:
PEDO01005885.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036903
51 - 2081
2031