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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005890.1_1430_1465_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1430 - 1465
Intron Length:
36

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGTATTCA
5'SS Class:
weak_major
3'SS Sequence:
GAGTTGACCTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAAGGATG
Flanking Amino Acid:
VYYNAEERVHFTWGYGLLIR
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.3
0.08
1.1
53
33.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
45.5
-0.2
1.7
47.9
44.6
Minor 5ss
43.4
-0.7
2.8
58.9
45.7
Minor BPS
44
-0.6
2
54.65
40.1

Associated Gene:

Gene:
NME6
Ensembl Gene ID:
ENSAPLG00000009073
Chromosome:
PEDO01005890.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009431
33 - 1500
1468